PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00000839.1.g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family FAR1
Protein Properties Length: 914aa    MW: 103245 Da    PI: 6.4126
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00000839.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1478.4e-1563137290
                            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtk 80 
                                      Y+eYA+++GF+ ++ +s++s+ +g++t r+fvC keg ++++ ++              C+a+l+++ +  ++w+ tk
  FANhyb_rscf00000839.1.g00001.1  63 LYEEYARRLGFNSKVGQSSRSNPDGTTTAREFVCGKEGVKRRHGDS--------------CDAMLRIESRGGNRWVSTK 127
                                     7***************************************998877..............******************* PP

                            FAR1  81 leleHnHela 90 
                                     +++eH+H+la
  FANhyb_rscf00000839.1.g00001.1 128 FVKEHSHALA 137
                                     ********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.5E-1163137IPR004330FAR1 DNA binding domain
PfamPF105518.9E-31274366IPR018289MULE transposase domain
PROSITE profilePS5096611.029552588IPR007527Zinc finger, SWIM-type
PfamPF044343.4E-9554586IPR007527Zinc finger, SWIM-type
SMARTSM005752.8E-7563590IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 914 aa     Download sequence    Send to blast
MDVQVIDVRA VGHSGMGDDG DAERSEGGEV NNGENPQAHV EEGEIPEPYV GMEFHSEEAA  60
KNLYEEYARR LGFNSKVGQS SRSNPDGTTT AREFVCGKEG VKRRHGDSCD AMLRIESRGG  120
NRWVSTKFVK EHSHALANPS PVHYLRPRRH FAGAAKNLAE AYQGVGIVPS GVMYVSMDGN  180
RASLEKNRLV RSASSAESNR QVKNAAPVNP IRPCSRRRTL GKDAQNLLEY FKKMQAENPG  240
FFYAIQLDED NHMGNVFWSD ARTRAAYSHF GDAVTLDTTY RVNQYRVPFA PFTGVNHHGQ  300
TILFGCALLL DESEASFNWL FKTFLTAMND RRPVSITTDQ DRAIQTAVSQ VFPEVRHCIS  360
KWHVLREGQE RLAHVCQAHP NFQVELYNCI NLTETIEEFE LSWDCILDKY DLRRNDWLQS  420
LYSARAQWVP VYFRDSFFAA IAPNQGFEVS FFEGYVNQQT TLPLFFRQYE RALENWFERE  480
VEADFDTICT TPVLRTPSPM EKQAANLYTR KIFAKFQEEL VETFVYTANR IEGDGAISTF  540
RVAKFEDDHK AYIVTLNYPE MRANCSCQLF EYSGILCRHV LTVFTVTNVL TLPSHYILKR  600
WTRNAKNGTG LDERSGELHD QESLTLRYNH LCREAIRYAE DGATTIETYN AAMTALRDGG  660
KKVSVVKRNV AKVTPPSSQV TGTGYEDKKN STSNSDMTPL LWPRQDEVMR RFNLNDAGAP  720
GQSVSDLNLP RMAPVSLLRD DGTPENMVVL PQLKSMTWVM ENKNSAPGNR VAVINLKLHD  780
YSRIPSVESE VKFQLSRVSL EPMLRSMAYI SEQLSTPANK VAVINLKLQD TDTSTGESEV  840
KFQVSRDTLG AMLRSMAYIR EQLSTALYIH YGRAESSFVD QCFVGYKEDN VFGGNVGLLI  900
AGSDGEMWFS IPTT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011469265.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLM5WT850.0M5WT85_PRUPE; Uncharacterized protein
STRINGPOPTR_0009s16010.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3